In order not to prevent conflict, we can change the use of $ in jQuery to some other shortcut lile $j or $jq.
This link describes how you would implement it.
http://learn.jquery.com/using-jquery-core/avoid-conflicts-other-libraries/
For quick reference, the most common case is reproduced here.
<script src="prototype.js"></script><script src="jquery.js"></script><script>var $j = jQuery.noConflict();// $j is now an alias to the jQuery function;// creating the new alias is optional.$j(document).ready(function() {$j( "div" ).hide();});// The $ variable now has the prototype meaning,// which is a shortcut for document.getElementById().// mainDiv below is a DOM element, not a jQuery object.window.onload = function() {var mainDiv = $( "main" );}</script>
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